Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_G7Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G7Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69222492 total, 52854 skipped (flags/unmapped)
Fragments: 34672478 total (34465829 tlen-paired, 2514 hash-paired, 322 singletons, 11417 discordant, 192396 orphans, 8700 too large [>5000 bp], 10026940 duplicates)
Reads: 73520877 total, 43650 skipped (flags/unmapped)
Fragments: 36827718 total (36626983 tlen-paired, 1835 hash-paired, 364 singletons, 7325 discordant, 191211 orphans, 6683 too large [>5000 bp], 10511311 duplicates)
Reads: 82243191 total, 78390 skipped (flags/unmapped)
Fragments: 41257758 total (40714573 tlen-paired, 2465 hash-paired, 352 singletons, 101643 discordant, 438725 orphans, 44181 too large [>5000 bp], 12095590 duplicates)
Reads: 82240045 total, 49935 skipped (flags/unmapped)
Fragments: 41200740 total (40939137 tlen-paired, 3005 hash-paired, 273 singletons, 11794 discordant, 246531 orphans, 17717 too large [>5000 bp], 12040822 duplicates)