Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BAGZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BAGZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BAGZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BAGZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65998627 total, 52972 skipped (flags/unmapped)
Fragments: 33065265 total (32852313 tlen-paired, 3129 hash-paired, 349 singletons, 11136 discordant, 198338 orphans, 6906 too large [>5000 bp], 9383303 duplicates)
Reads: 70838432 total, 42682 skipped (flags/unmapped)
Fragments: 35491074 total (35281863 tlen-paired, 2230 hash-paired, 362 singletons, 7459 discordant, 199160 orphans, 6562 too large [>5000 bp], 9895077 duplicates)
Reads: 78074138 total, 47799 skipped (flags/unmapped)
Fragments: 39116562 total (38862076 tlen-paired, 4431 hash-paired, 257 singletons, 11530 discordant, 238268 orphans, 15870 too large [>5000 bp], 11228324 duplicates)
Reads: 78286236 total, 76768 skipped (flags/unmapped)
Fragments: 39289347 total (38723404 tlen-paired, 1818 hash-paired, 336 singletons, 106949 discordant, 456840 orphans, 43975 too large [>5000 bp], 11277839 duplicates)