Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BPPR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPPR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPPR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPPR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68652001 total, 57968 skipped (flags/unmapped)
Fragments: 34415983 total (34147675 tlen-paired, 2398 hash-paired, 259 singletons, 12455 discordant, 253196 orphans, 7761 too large [>5000 bp], 8672896 duplicates)
Reads: 74415067 total, 52632 skipped (flags/unmapped)
Fragments: 37304745 total (37028258 tlen-paired, 2997 hash-paired, 366 singletons, 8927 discordant, 264197 orphans, 8754 too large [>5000 bp], 9255811 duplicates)
Reads: 80877773 total, 55269 skipped (flags/unmapped)
Fragments: 40550381 total (40226196 tlen-paired, 4015 hash-paired, 300 singletons, 12830 discordant, 307040 orphans, 14541 too large [>5000 bp], 10408109 duplicates)
Reads: 81853237 total, 99852 skipped (flags/unmapped)
Fragments: 41124301 total (40347361 tlen-paired, 5901 hash-paired, 399 singletons, 148762 discordant, 621878 orphans, 63530 too large [>5000 bp], 10529823 duplicates)