Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_537-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_537-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_537-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_537-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86333942 total, 57520 skipped (flags/unmapped)
Fragments: 43256004 total (42991624 tlen-paired, 2746 hash-paired, 355 singletons, 9814 discordant, 251465 orphans, 8117 too large [>5000 bp], 11801146 duplicates)
Reads: 92876344 total, 51457 skipped (flags/unmapped)
Fragments: 46534254 total (46262112 tlen-paired, 2934 hash-paired, 494 singletons, 7349 discordant, 261365 orphans, 9119 too large [>5000 bp], 12480267 duplicates)
Reads: 101040096 total, 54816 skipped (flags/unmapped)
Fragments: 50629512 total (50299393 tlen-paired, 5148 hash-paired, 339 singletons, 10841 discordant, 313791 orphans, 20193 too large [>5000 bp], 14072795 duplicates)
Reads: 102379875 total, 85841 skipped (flags/unmapped)
Fragments: 51406342 total (50598431 tlen-paired, 1900 hash-paired, 466 singletons, 157199 discordant, 648346 orphans, 65081 too large [>5000 bp], 14284129 duplicates)