Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_496-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_496-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_496-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_496-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80866290 total, 61522 skipped (flags/unmapped)
Fragments: 40513309 total (40255460 tlen-paired, 2898 hash-paired, 304 singletons, 13531 discordant, 241116 orphans, 9785 too large [>5000 bp], 13139599 duplicates)
Reads: 87792386 total, 54052 skipped (flags/unmapped)
Fragments: 43992089 total (43698246 tlen-paired, 4286 hash-paired, 275 singletons, 11579 discordant, 277703 orphans, 16067 too large [>5000 bp], 14456218 duplicates)
Reads: 87584835 total, 49817 skipped (flags/unmapped)
Fragments: 43881048 total (43622483 tlen-paired, 3013 hash-paired, 386 singletons, 9360 discordant, 245806 orphans, 9557 too large [>5000 bp], 14021640 duplicates)
Reads: 96795214 total, 86163 skipped (flags/unmapped)
Fragments: 48575153 total (47888207 tlen-paired, 2257 hash-paired, 375 singletons, 134000 discordant, 550314 orphans, 54717 too large [>5000 bp], 15971184 duplicates)