Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_6NU-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_6NU-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1136_6NU-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_6NU-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai


Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60514919 total, 44120 skipped (flags/unmapped)
Fragments: 30330389 total (30119472 tlen-paired, 2233 hash-paired, 267 singletons, 7339 discordant, 201078 orphans, 5683 too large [>5000 bp], 7680738 duplicates)
Reads: 65658080 total, 39961 skipped (flags/unmapped)
Fragments: 32907101 total (32687997 tlen-paired, 2518 hash-paired, 242 singletons, 5277 discordant, 211067 orphans, 7613 too large [>5000 bp], 8170729 duplicates)
Reads: 72050113 total, 70643 skipped (flags/unmapped)
Fragments: 36202004 total (35540538 tlen-paired, 2108 hash-paired, 361 singletons, 128668 discordant, 530329 orphans, 53076 too large [>5000 bp], 9280306 duplicates)
Reads: 71458948 total, 43014 skipped (flags/unmapped)
Fragments: 35818504 total (35547006 tlen-paired, 4387 hash-paired, 238 singletons, 7741 discordant, 259132 orphans, 19148 too large [>5000 bp], 9200826 duplicates)