Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7U9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7U9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7U9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7U9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74790955 total, 41611 skipped (flags/unmapped)
Fragments: 37510662 total (37193763 tlen-paired, 3243 hash-paired, 283 singletons, 8526 discordant, 304847 orphans, 16575 too large [>5000 bp], 10353987 duplicates)
Reads: 69715365 total, 46126 skipped (flags/unmapped)
Fragments: 34959215 total (34685429 tlen-paired, 2909 hash-paired, 324 singletons, 9536 discordant, 261017 orphans, 6075 too large [>5000 bp], 9499568 duplicates)
Reads: 75555702 total, 41226 skipped (flags/unmapped)
Fragments: 37889790 total (37599150 tlen-paired, 3389 hash-paired, 364 singletons, 6817 discordant, 280070 orphans, 7665 too large [>5000 bp], 10090675 duplicates)
Reads: 82925799 total, 79752 skipped (flags/unmapped)
Fragments: 41696716 total (40834072 tlen-paired, 3193 hash-paired, 434 singletons, 172988 discordant, 686029 orphans, 69539 too large [>5000 bp], 11486691 duplicates)