Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3YQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3YQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3YQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3YQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 37025782 total, 25196 skipped (flags/unmapped)
Fragments: 18577594 total (18411047 tlen-paired, 1383 hash-paired, 143 singletons, 3766 discordant, 161255 orphans, 3398 too large [>5000 bp], 5142227 duplicates)
Reads: 40098311 total, 22973 skipped (flags/unmapped)
Fragments: 20122212 total (19939894 tlen-paired, 1734 hash-paired, 119 singletons, 3398 discordant, 177067 orphans, 4050 too large [>5000 bp], 5600844 duplicates)
Reads: 40083630 total, 22478 skipped (flags/unmapped)
Fragments: 20113228 total (19936858 tlen-paired, 1287 hash-paired, 198 singletons, 2685 discordant, 172200 orphans, 3547 too large [>5000 bp], 5417859 duplicates)
Reads: 44594631 total, 42619 skipped (flags/unmapped)
Fragments: 22454112 total (21881582 tlen-paired, 1537 hash-paired, 219 singletons, 118461 discordant, 452313 orphans, 48160 too large [>5000 bp], 6205602 duplicates)