Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7F9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7F9-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76104676 total, 54532 skipped (flags/unmapped)
Fragments: 38138476 total (37879123 tlen-paired, 3506 hash-paired, 319 singletons, 12071 discordant, 243457 orphans, 8484 too large [>5000 bp], 10445861 duplicates)
Reads: 81979003 total, 47236 skipped (flags/unmapped)
Fragments: 41087781 total (40806516 tlen-paired, 4424 hash-paired, 278 singletons, 10642 discordant, 265921 orphans, 11202 too large [>5000 bp], 11516823 duplicates)
Reads: 82570505 total, 48190 skipped (flags/unmapped)
Fragments: 41378324 total (41113663 tlen-paired, 3623 hash-paired, 402 singletons, 8777 discordant, 251859 orphans, 8964 too large [>5000 bp], 11194646 duplicates)
Reads: 90302590 total, 83096 skipped (flags/unmapped)
Fragments: 45343737 total (44615116 tlen-paired, 2400 hash-paired, 361 singletons, 143305 discordant, 582555 orphans, 57468 too large [>5000 bp], 12733385 duplicates)