Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5CY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5CY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5CY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5CY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81623845 total, 55648 skipped (flags/unmapped)
Fragments: 40906317 total (40630715 tlen-paired, 3187 hash-paired, 354 singletons, 9754 discordant, 262307 orphans, 9112 too large [>5000 bp], 11037909 duplicates)
Reads: 88161230 total, 46484 skipped (flags/unmapped)
Fragments: 44186903 total (43902847 tlen-paired, 3092 hash-paired, 378 singletons, 6756 discordant, 273830 orphans, 7574 too large [>5000 bp], 11751759 duplicates)
Reads: 96480761 total, 49249 skipped (flags/unmapped)
Fragments: 48360138 total (48010883 tlen-paired, 4547 hash-paired, 313 singletons, 10576 discordant, 333819 orphans, 22684 too large [>5000 bp], 13289840 duplicates)
Reads: 97831725 total, 89446 skipped (flags/unmapped)
Fragments: 49145191 total (48282399 tlen-paired, 4224 hash-paired, 397 singletons, 168797 discordant, 689374 orphans, 70834 too large [>5000 bp], 13490646 duplicates)