Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7BF-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BF-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BF-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7BF-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85884254 total, 57563 skipped (flags/unmapped)
Fragments: 43020745 total (42770870 tlen-paired, 3011 hash-paired, 425 singletons, 12013 discordant, 234426 orphans, 10026 too large [>5000 bp], 11828753 duplicates)
Reads: 100312048 total, 51875 skipped (flags/unmapped)
Fragments: 50258044 total (49947224 tlen-paired, 4424 hash-paired, 331 singletons, 11983 discordant, 294082 orphans, 19249 too large [>5000 bp], 14051606 duplicates)
Reads: 91575417 total, 50100 skipped (flags/unmapped)
Fragments: 45874062 total (45621228 tlen-paired, 3730 hash-paired, 415 singletons, 8027 discordant, 240662 orphans, 9135 too large [>5000 bp], 12389824 duplicates)
Reads: 101630941 total, 82754 skipped (flags/unmapped)
Fragments: 51001379 total (50294542 tlen-paired, 2784 hash-paired, 414 singletons, 135452 discordant, 568187 orphans, 57015 too large [>5000 bp], 14262472 duplicates)