Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6AP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6AP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6AP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6AP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76754922 total, 60939 skipped (flags/unmapped)
Fragments: 38443558 total (38225290 tlen-paired, 2975 hash-paired, 367 singletons, 9680 discordant, 205246 orphans, 6240 too large [>5000 bp], 11454903 duplicates)
Reads: 82434819 total, 51613 skipped (flags/unmapped)
Fragments: 41289909 total (41066735 tlen-paired, 3268 hash-paired, 426 singletons, 6444 discordant, 213036 orphans, 8425 too large [>5000 bp], 12108783 duplicates)
Reads: 91538579 total, 91721 skipped (flags/unmapped)
Fragments: 45929215 total (45291368 tlen-paired, 2624 hash-paired, 397 singletons, 122433 discordant, 512393 orphans, 50609 too large [>5000 bp], 13859200 duplicates)
Reads: 90678954 total, 56297 skipped (flags/unmapped)
Fragments: 45421767 total (45150971 tlen-paired, 4566 hash-paired, 357 singletons, 9693 discordant, 256180 orphans, 17830 too large [>5000 bp], 13698285 duplicates)