Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BB3R-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BB3R-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BB3R-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BB3R-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74751153 total, 63175 skipped (flags/unmapped)
Fragments: 37448136 total (37201052 tlen-paired, 2711 hash-paired, 387 singletons, 12191 discordant, 231795 orphans, 11944 too large [>5000 bp], 11886627 duplicates)
Reads: 79684891 total, 48849 skipped (flags/unmapped)
Fragments: 39927363 total (39679836 tlen-paired, 3420 hash-paired, 395 singletons, 7913 discordant, 235799 orphans, 8755 too large [>5000 bp], 12444923 duplicates)
Reads: 87934081 total, 53947 skipped (flags/unmapped)
Fragments: 44065168 total (43772476 tlen-paired, 2836 hash-paired, 338 singletons, 11890 discordant, 277628 orphans, 13882 too large [>5000 bp], 14128743 duplicates)
Reads: 88894960 total, 89995 skipped (flags/unmapped)
Fragments: 44625206 total (43931728 tlen-paired, 3542 hash-paired, 403 singletons, 132813 discordant, 556720 orphans, 55838 too large [>5000 bp], 14302908 duplicates)