Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_01L-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01L-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01L-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_01L-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60281923 total, 45546 skipped (flags/unmapped)
Fragments: 30197832 total (30013201 tlen-paired, 1960 hash-paired, 280 singletons, 9116 discordant, 173275 orphans, 7134 too large [>5000 bp], 9011840 duplicates)
Reads: 64812626 total, 37695 skipped (flags/unmapped)
Fragments: 32469071 total (32284367 tlen-paired, 1919 hash-paired, 252 singletons, 5962 discordant, 176571 orphans, 6806 too large [>5000 bp], 9528292 duplicates)
Reads: 72015944 total, 70377 skipped (flags/unmapped)
Fragments: 36136273 total (35625381 tlen-paired, 2682 hash-paired, 289 singletons, 97333 discordant, 410588 orphans, 41949 too large [>5000 bp], 10923208 duplicates)
Reads: 71552580 total, 43235 skipped (flags/unmapped)
Fragments: 35846829 total (35613382 tlen-paired, 2416 hash-paired, 229 singletons, 9704 discordant, 221098 orphans, 18507 too large [>5000 bp], 10814918 duplicates)