Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZI-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZI-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZI-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4ZI-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73093782 total, 46326 skipped (flags/unmapped)
Fragments: 36611309 total (36412592 tlen-paired, 3202 hash-paired, 308 singletons, 8711 discordant, 186496 orphans, 5821 too large [>5000 bp], 8968155 duplicates)
Reads: 79106564 total, 36762 skipped (flags/unmapped)
Fragments: 39625028 total (39422814 tlen-paired, 2908 hash-paired, 442 singletons, 6150 discordant, 192714 orphans, 6451 too large [>5000 bp], 9575556 duplicates)
Reads: 86586932 total, 67412 skipped (flags/unmapped)
Fragments: 43444372 total (42871991 tlen-paired, 2516 hash-paired, 360 singletons, 108761 discordant, 460744 orphans, 45940 too large [>5000 bp], 10868556 duplicates)
Reads: 86205089 total, 40398 skipped (flags/unmapped)
Fragments: 43181870 total (42956448 tlen-paired, 2471 hash-paired, 271 singletons, 8526 discordant, 214154 orphans, 7688 too large [>5000 bp], 10789091 duplicates)