Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_13S-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_13S-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_13S-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_13S-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69244016 total, 52822 skipped (flags/unmapped)
Fragments: 34675819 total (34485856 tlen-paired, 2640 hash-paired, 265 singletons, 11075 discordant, 175983 orphans, 7902 too large [>5000 bp], 10017453 duplicates)
Reads: 74521165 total, 44416 skipped (flags/unmapped)
Fragments: 37319720 total (37131539 tlen-paired, 2357 hash-paired, 349 singletons, 7195 discordant, 178280 orphans, 7969 too large [>5000 bp], 10611954 duplicates)
Reads: 74757944 total, 46607 skipped (flags/unmapped)
Fragments: 37443576 total (37227507 tlen-paired, 2636 hash-paired, 286 singletons, 9064 discordant, 204083 orphans, 14277 too large [>5000 bp], 10962649 duplicates)
Reads: 82263244 total, 78108 skipped (flags/unmapped)
Fragments: 41248076 total (40765167 tlen-paired, 2631 hash-paired, 347 singletons, 92380 discordant, 387551 orphans, 38441 too large [>5000 bp], 12117618 duplicates)