Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6HJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6HJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6HJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6HJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 28624393 total, 20955 skipped (flags/unmapped)
Fragments: 14360180 total (14234091 tlen-paired, 1097 hash-paired, 136 singletons, 2732 discordant, 122124 orphans, 2669 too large [>5000 bp], 3713363 duplicates)
Reads: 31012575 total, 18804 skipped (flags/unmapped)
Fragments: 15560984 total (15413741 tlen-paired, 1773 hash-paired, 129 singletons, 2575 discordant, 142766 orphans, 7349 too large [>5000 bp], 4030477 duplicates)
Reads: 31276716 total, 18054 skipped (flags/unmapped)
Fragments: 15693096 total (15556970 tlen-paired, 908 hash-paired, 160 singletons, 1912 discordant, 133146 orphans, 2888 too large [>5000 bp], 3924245 duplicates)
Reads: 34531296 total, 34320 skipped (flags/unmapped)
Fragments: 17385013 total (16946825 tlen-paired, 1310 hash-paired, 167 singletons, 90292 discordant, 346419 orphans, 36768 too large [>5000 bp], 4482938 duplicates)