Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5O6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5O6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5O6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5O6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93233814 total, 74047 skipped (flags/unmapped)
Fragments: 46702464 total (46418215 tlen-paired, 5151 hash-paired, 351 singletons, 12181 discordant, 266566 orphans, 10878 too large [>5000 bp], 15666443 duplicates)
Reads: 99958299 total, 59328 skipped (flags/unmapped)
Fragments: 50078055 total (49790715 tlen-paired, 2365 hash-paired, 446 singletons, 8354 discordant, 276175 orphans, 9741 too large [>5000 bp], 16557428 duplicates)
Reads: 110567183 total, 67325 skipped (flags/unmapped)
Fragments: 55394587 total (55041452 tlen-paired, 5803 hash-paired, 354 singletons, 12266 discordant, 334712 orphans, 22875 too large [>5000 bp], 18791135 duplicates)
Reads: 111376534 total, 107331 skipped (flags/unmapped)
Fragments: 55901215 total (55069841 tlen-paired, 2899 hash-paired, 449 singletons, 161214 discordant, 666812 orphans, 67017 too large [>5000 bp], 18971935 duplicates)