Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_8EZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8EZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8EZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_8EZ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90520099 total, 63289 skipped (flags/unmapped)
Fragments: 45387368 total (45037294 tlen-paired, 2878 hash-paired, 417 singletons, 11472 discordant, 335307 orphans, 8899 too large [>5000 bp], 13451377 duplicates)
Reads: 97920609 total, 54419 skipped (flags/unmapped)
Fragments: 49101122 total (48733027 tlen-paired, 3381 hash-paired, 495 singletons, 8148 discordant, 356071 orphans, 10256 too large [>5000 bp], 14326619 duplicates)
Reads: 108062348 total, 95633 skipped (flags/unmapped)
Fragments: 54347994 total (53211199 tlen-paired, 3073 hash-paired, 452 singletons, 223387 discordant, 909883 orphans, 90531 too large [>5000 bp], 16389486 duplicates)
Reads: 106733186 total, 57857 skipped (flags/unmapped)
Fragments: 53528482 total (53098480 tlen-paired, 3807 hash-paired, 340 singletons, 11928 discordant, 413927 orphans, 16316 too large [>5000 bp], 16168465 duplicates)