Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5UJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5UJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5UJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5UJ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61211414 total, 45836 skipped (flags/unmapped)
Fragments: 30657317 total (30487166 tlen-paired, 2010 hash-paired, 270 singletons, 6615 discordant, 161256 orphans, 6235 too large [>5000 bp], 8512027 duplicates)
Reads: 65993077 total, 40981 skipped (flags/unmapped)
Fragments: 33054147 total (32878665 tlen-paired, 2379 hash-paired, 271 singletons, 4365 discordant, 168467 orphans, 6270 too large [>5000 bp], 9014583 duplicates)
Reads: 73475701 total, 71161 skipped (flags/unmapped)
Fragments: 36866906 total (36351697 tlen-paired, 2067 hash-paired, 291 singletons, 100002 discordant, 412849 orphans, 41934 too large [>5000 bp], 10330009 duplicates)
Reads: 72827403 total, 43633 skipped (flags/unmapped)
Fragments: 36483008 total (36259196 tlen-paired, 4507 hash-paired, 215 singletons, 6809 discordant, 212281 orphans, 15125 too large [>5000 bp], 10220754 duplicates)