Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_5O4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_5O4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_5O4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_5O4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58118339 total, 47870 skipped (flags/unmapped)
Fragments: 29114466 total (28932561 tlen-paired, 2080 hash-paired, 256 singletons, 9214 discordant, 170355 orphans, 6074 too large [>5000 bp], 8235297 duplicates)
Reads: 62382636 total, 41874 skipped (flags/unmapped)
Fragments: 31249332 total (31068285 tlen-paired, 2024 hash-paired, 312 singletons, 6099 discordant, 172612 orphans, 7511 too large [>5000 bp], 8715883 duplicates)
Reads: 69497940 total, 72995 skipped (flags/unmapped)
Fragments: 34874223 total (34374011 tlen-paired, 2662 hash-paired, 327 singletons, 94405 discordant, 402818 orphans, 39822 too large [>5000 bp], 9961218 duplicates)
Reads: 69200605 total, 46692 skipped (flags/unmapped)
Fragments: 34670123 total (34437389 tlen-paired, 5004 hash-paired, 235 singletons, 9551 discordant, 217944 orphans, 15923 too large [>5000 bp], 9888037 duplicates)