Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2L1-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2L1-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2L1-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2L1-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67323195 total, 46088 skipped (flags/unmapped)
Fragments: 33728105 total (33523880 tlen-paired, 3016 hash-paired, 359 singletons, 8698 discordant, 192152 orphans, 6704 too large [>5000 bp], 8103171 duplicates)
Reads: 72500564 total, 38353 skipped (flags/unmapped)
Fragments: 36322596 total (36115219 tlen-paired, 3157 hash-paired, 380 singletons, 6259 discordant, 197581 orphans, 7490 too large [>5000 bp], 8624739 duplicates)
Reads: 78820021 total, 40006 skipped (flags/unmapped)
Fragments: 39494533 total (39235036 tlen-paired, 4465 hash-paired, 243 singletons, 9241 discordant, 245548 orphans, 18370 too large [>5000 bp], 9690852 duplicates)
Reads: 79845174 total, 73195 skipped (flags/unmapped)
Fragments: 40073180 total (39484787 tlen-paired, 2929 hash-paired, 321 singletons, 112899 discordant, 472244 orphans, 49092 too large [>5000 bp], 9842392 duplicates)