Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7WX-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7WX-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7WX-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7WX-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83452365 total, 48196 skipped (flags/unmapped)
Fragments: 41816955 total (41542685 tlen-paired, 2993 hash-paired, 322 singletons, 11568 discordant, 259387 orphans, 14984 too large [>5000 bp], 12964813 duplicates)
Reads: 77095788 total, 53728 skipped (flags/unmapped)
Fragments: 38631351 total (38378493 tlen-paired, 2902 hash-paired, 352 singletons, 13390 discordant, 236214 orphans, 7962 too large [>5000 bp], 11840927 duplicates)
Reads: 82303814 total, 47536 skipped (flags/unmapped)
Fragments: 41238466 total (40987951 tlen-paired, 2200 hash-paired, 327 singletons, 9431 discordant, 238557 orphans, 9115 too large [>5000 bp], 12431276 duplicates)
Reads: 91804069 total, 80118 skipped (flags/unmapped)
Fragments: 46075098 total (45410187 tlen-paired, 2861 hash-paired, 335 singletons, 128745 discordant, 532970 orphans, 53530 too large [>5000 bp], 14317429 duplicates)