Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4U6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_4U6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_4U6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4U6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 50955691 total, 41394 skipped (flags/unmapped)
Fragments: 25520057 total (25372329 tlen-paired, 2482 hash-paired, 166 singletons, 8181 discordant, 136899 orphans, 5624 too large [>5000 bp], 6428063 duplicates)
Reads: 54235156 total, 32469 skipped (flags/unmapped)
Fragments: 27164433 total (27022222 tlen-paired, 1656 hash-paired, 204 singletons, 5320 discordant, 135031 orphans, 4528 too large [>5000 bp], 6764981 duplicates)
Reads: 60145615 total, 36928 skipped (flags/unmapped)
Fragments: 30127448 total (29941237 tlen-paired, 2786 hash-paired, 187 singletons, 8368 discordant, 174870 orphans, 14424 too large [>5000 bp], 7719118 duplicates)
Reads: 60266832 total, 59690 skipped (flags/unmapped)
Fragments: 30227994 total (29844740 tlen-paired, 2365 hash-paired, 226 singletons, 71209 discordant, 309454 orphans, 30417 too large [>5000 bp], 7768132 duplicates)