Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3NB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3NB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3NB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3NB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81210139 total, 57981 skipped (flags/unmapped)
Fragments: 40681073 total (40438554 tlen-paired, 2465 hash-paired, 318 singletons, 11120 discordant, 228616 orphans, 9473 too large [>5000 bp], 13302338 duplicates)
Reads: 86364119 total, 49331 skipped (flags/unmapped)
Fragments: 43266428 total (43023198 tlen-paired, 2417 hash-paired, 365 singletons, 7487 discordant, 232961 orphans, 7629 too large [>5000 bp], 13950623 duplicates)
Reads: 96884239 total, 88743 skipped (flags/unmapped)
Fragments: 48621181 total (47923306 tlen-paired, 3091 hash-paired, 420 singletons, 134560 discordant, 559804 orphans, 56679 too large [>5000 bp], 16110939 duplicates)
Reads: 96341695 total, 56226 skipped (flags/unmapped)
Fragments: 48266612 total (47972867 tlen-paired, 3632 hash-paired, 293 singletons, 11368 discordant, 278452 orphans, 15495 too large [>5000 bp], 15982542 duplicates)