Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_boM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_boM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_boM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_boM-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91604728 total, 63074 skipped (flags/unmapped)
Fragments: 45934418 total (45565425 tlen-paired, 3921 hash-paired, 461 singletons, 16074 discordant, 348537 orphans, 10908 too large [>5000 bp], 16870271 duplicates)
Reads: 97867282 total, 52743 skipped (flags/unmapped)
Fragments: 49077705 total (48702472 tlen-paired, 2522 hash-paired, 460 singletons, 11414 discordant, 360837 orphans, 10213 too large [>5000 bp], 17748687 duplicates)
Reads: 108241572 total, 57854 skipped (flags/unmapped)
Fragments: 54280320 total (53842500 tlen-paired, 5819 hash-paired, 457 singletons, 16385 discordant, 415159 orphans, 19347 too large [>5000 bp], 20203402 duplicates)
Reads: 109794141 total, 98634 skipped (flags/unmapped)
Fragments: 55201191 total (54109758 tlen-paired, 3281 hash-paired, 451 singletons, 212085 discordant, 875616 orphans, 84596 too large [>5000 bp], 20510354 duplicates)