Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BKG2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BKG2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BKG2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BKG2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97830719 total, 75154 skipped (flags/unmapped)
Fragments: 49071664 total (48633923 tlen-paired, 6436 hash-paired, 496 singletons, 18754 discordant, 412055 orphans, 12394 too large [>5000 bp], 17973420 duplicates)
Reads: 102662960 total, 66549 skipped (flags/unmapped)
Fragments: 51500547 total (51053464 tlen-paired, 5844 hash-paired, 447 singletons, 13414 discordant, 427378 orphans, 11571 too large [>5000 bp], 18527001 duplicates)
Reads: 112696856 total, 112859 skipped (flags/unmapped)
Fragments: 56708366 total (55424204 tlen-paired, 5497 hash-paired, 509 singletons, 238018 discordant, 1040138 orphans, 103956 too large [>5000 bp], 20845287 duplicates)
Reads: 117868563 total, 70032 skipped (flags/unmapped)
Fragments: 59127390 total (58590322 tlen-paired, 5555 hash-paired, 407 singletons, 21314 discordant, 509792 orphans, 26975 too large [>5000 bp], 21821340 duplicates)