Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BQM9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQM9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BQM9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQM9-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65079875 total, 42685 skipped (flags/unmapped)
Fragments: 32620633 total (32389402 tlen-paired, 2969 hash-paired, 346 singletons, 9536 discordant, 218380 orphans, 7325 too large [>5000 bp], 10408545 duplicates)
Reads: 69942810 total, 34671 skipped (flags/unmapped)
Fragments: 35062674 total (34822300 tlen-paired, 2684 hash-paired, 362 singletons, 7075 discordant, 230253 orphans, 6703 too large [>5000 bp], 10932113 duplicates)
Reads: 77184908 total, 66579 skipped (flags/unmapped)
Fragments: 38783015 total (38091043 tlen-paired, 2719 hash-paired, 329 singletons, 133658 discordant, 555266 orphans, 53947 too large [>5000 bp], 12417088 duplicates)
Reads: 76091067 total, 36570 skipped (flags/unmapped)
Fragments: 38146412 total (37874751 tlen-paired, 3270 hash-paired, 291 singletons, 10316 discordant, 257784 orphans, 9874 too large [>5000 bp], 12212463 duplicates)