Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BIV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BIV5-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97696460 total, 61583 skipped (flags/unmapped)
Fragments: 48968145 total (48628642 tlen-paired, 4403 hash-paired, 484 singletons, 14197 discordant, 320419 orphans, 9745 too large [>5000 bp], 18729930 duplicates)
Reads: 104800451 total, 56144 skipped (flags/unmapped)
Fragments: 52529897 total (52177378 tlen-paired, 4016 hash-paired, 569 singletons, 9896 discordant, 338038 orphans, 11560 too large [>5000 bp], 19771667 duplicates)
Reads: 114635053 total, 57635 skipped (flags/unmapped)
Fragments: 57463584 total (57044108 tlen-paired, 4570 hash-paired, 422 singletons, 15020 discordant, 399464 orphans, 25068 too large [>5000 bp], 22131922 duplicates)
Reads: 116319640 total, 101495 skipped (flags/unmapped)
Fragments: 58439567 total (57416360 tlen-paired, 4130 hash-paired, 497 singletons, 198858 discordant, 819722 orphans, 79615 too large [>5000 bp], 22493089 duplicates)