Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_E4B-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_E4B-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_E4B-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_E4B-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 38565351 total, 43362 skipped (flags/unmapped)
Fragments: 19724365 total (18780338 tlen-paired, 2987 hash-paired, 225 singletons, 3217 discordant, 937598 orphans, 5541 too large [>5000 bp], 9218347 duplicates)
Reads: 41349861 total, 42626 skipped (flags/unmapped)
Fragments: 21171491 total (20117815 tlen-paired, 2487 hash-paired, 296 singletons, 2400 discordant, 1048493 orphans, 6521 too large [>5000 bp], 9647962 duplicates)
Reads: 41660983 total, 38394 skipped (flags/unmapped)
Fragments: 21322149 total (20281990 tlen-paired, 2261 hash-paired, 170 singletons, 2687 discordant, 1035041 orphans, 6751 too large [>5000 bp], 10004358 duplicates)
Reads: 49934295 total, 81944 skipped (flags/unmapped)
Fragments: 26098338 total (22321660 tlen-paired, 2176 hash-paired, 374 singletons, 798469 discordant, 2975659 orphans, 315854 too large [>5000 bp], 11449708 duplicates)