Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_Q-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_Q-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_Q-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_Q-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 45979247 total, 56006 skipped (flags/unmapped)
Fragments: 23613693 total (22284457 tlen-paired, 2854 hash-paired, 295 singletons, 3669 discordant, 1322418 orphans, 9284 too large [>5000 bp], 11067112 duplicates)
Reads: 48809821 total, 49035 skipped (flags/unmapped)
Fragments: 25124146 total (23619152 tlen-paired, 2322 hash-paired, 356 singletons, 3010 discordant, 1499306 orphans, 6078 too large [>5000 bp], 11490411 duplicates)
Reads: 54348231 total, 48975 skipped (flags/unmapped)
Fragments: 27944154 total (26331816 tlen-paired, 2893 hash-paired, 259 singletons, 3435 discordant, 1605751 orphans, 8479 too large [>5000 bp], 13168647 duplicates)
Reads: 60687773 total, 127600 skipped (flags/unmapped)
Fragments: 32027297 total (26502342 tlen-paired, 2823 hash-paired, 435 singletons, 1145499 discordant, 4376198 orphans, 441106 too large [>5000 bp], 13936869 duplicates)