Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_DK-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DK-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DK-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DK-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84168275 total, 58238 skipped (flags/unmapped)
Fragments: 42177595 total (41896887 tlen-paired, 4008 hash-paired, 335 singletons, 13473 discordant, 262892 orphans, 9037 too large [>5000 bp], 15942730 duplicates)
Reads: 90670936 total, 47008 skipped (flags/unmapped)
Fragments: 45440641 total (45154073 tlen-paired, 3571 hash-paired, 396 singletons, 9825 discordant, 272776 orphans, 7909 too large [>5000 bp], 16908988 duplicates)
Reads: 99794214 total, 94836 skipped (flags/unmapped)
Fragments: 50105556 total (49317191 tlen-paired, 4380 hash-paired, 377 singletons, 150557 discordant, 633051 orphans, 60847 too large [>5000 bp], 19095296 duplicates)
Reads: 98599802 total, 53742 skipped (flags/unmapped)
Fragments: 49411697 total (49081371 tlen-paired, 5614 hash-paired, 345 singletons, 13842 discordant, 310525 orphans, 16768 too large [>5000 bp], 18813984 duplicates)