Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bGd-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bGd-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bGd-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bGd-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67092890 total, 46014 skipped (flags/unmapped)
Fragments: 33666230 total (33357841 tlen-paired, 2169 hash-paired, 294 singletons, 9826 discordant, 296100 orphans, 5405 too large [>5000 bp], 11663257 duplicates)
Reads: 73158129 total, 41901 skipped (flags/unmapped)
Fragments: 36711221 total (36376598 tlen-paired, 2323 hash-paired, 391 singletons, 7078 discordant, 324831 orphans, 9504 too large [>5000 bp], 12495805 duplicates)
Reads: 81068770 total, 78207 skipped (flags/unmapped)
Fragments: 40826705 total (39795591 tlen-paired, 2956 hash-paired, 339 singletons, 205023 discordant, 822796 orphans, 80144 too large [>5000 bp], 14212886 duplicates)
Reads: 79840301 total, 45607 skipped (flags/unmapped)
Fragments: 40068538 total (39690358 tlen-paired, 4297 hash-paired, 272 singletons, 10591 discordant, 363020 orphans, 10455 too large [>5000 bp], 14010594 duplicates)