Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BFJL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFJL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFJL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BFJL-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53601126 total, 36193 skipped (flags/unmapped)
Fragments: 26862094 total (26678326 tlen-paired, 2721 hash-paired, 246 singletons, 9846 discordant, 170955 orphans, 5973 too large [>5000 bp], 8641565 duplicates)
Reads: 57502489 total, 29515 skipped (flags/unmapped)
Fragments: 28818255 total (28635627 tlen-paired, 2375 hash-paired, 248 singletons, 6691 discordant, 173314 orphans, 5013 too large [>5000 bp], 9068205 duplicates)
Reads: 62995851 total, 32135 skipped (flags/unmapped)
Fragments: 31573766 total (31354292 tlen-paired, 3895 hash-paired, 211 singletons, 9775 discordant, 205593 orphans, 10994 too large [>5000 bp], 10185244 duplicates)
Reads: 63620672 total, 56107 skipped (flags/unmapped)
Fragments: 31940943 total (31453707 tlen-paired, 2815 hash-paired, 282 singletons, 91966 discordant, 392173 orphans, 37567 too large [>5000 bp], 10329146 duplicates)