Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bT3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bT3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bT3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bT3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89703175 total, 59317 skipped (flags/unmapped)
Fragments: 44969482 total (44636847 tlen-paired, 4835 hash-paired, 420 singletons, 15820 discordant, 311560 orphans, 8437 too large [>5000 bp], 16244158 duplicates)
Reads: 96753889 total, 50135 skipped (flags/unmapped)
Fragments: 48504809 total (48166215 tlen-paired, 2937 hash-paired, 446 singletons, 11197 discordant, 324014 orphans, 9298 too large [>5000 bp], 17286897 duplicates)
Reads: 107339256 total, 99865 skipped (flags/unmapped)
Fragments: 53926248 total (52981046 tlen-paired, 4326 hash-paired, 410 singletons, 182295 discordant, 758171 orphans, 72738 too large [>5000 bp], 19762320 duplicates)
Reads: 105777885 total, 55235 skipped (flags/unmapped)
Fragments: 53027292 total (52640480 tlen-paired, 6856 hash-paired, 349 singletons, 16326 discordant, 363281 orphans, 15848 too large [>5000 bp], 19428300 duplicates)