Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGR2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGR2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGR2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGR2-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 99689182 total, 62571 skipped (flags/unmapped)
Fragments: 50009579 total (49576606 tlen-paired, 3929 hash-paired, 442 singletons, 13111 discordant, 415491 orphans, 11693 too large [>5000 bp], 19318835 duplicates)
Reads: 106273264 total, 51975 skipped (flags/unmapped)
Fragments: 53324955 total (52865432 tlen-paired, 2782 hash-paired, 557 singletons, 9408 discordant, 446776 orphans, 9356 too large [>5000 bp], 20338292 duplicates)
Reads: 119223852 total, 109138 skipped (flags/unmapped)
Fragments: 60019873 total (58580290 tlen-paired, 3294 hash-paired, 502 singletons, 286095 discordant, 1149692 orphans, 112581 too large [>5000 bp], 23278593 duplicates)
Reads: 117102112 total, 57299 skipped (flags/unmapped)
Fragments: 58754813 total (58239112 tlen-paired, 3195 hash-paired, 426 singletons, 13817 discordant, 498263 orphans, 16938 too large [>5000 bp], 22894892 duplicates)