Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eGF-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eGF-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_eGF-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_eGF-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77903030 total, 53283 skipped (flags/unmapped)
Fragments: 39086477 total (38728546 tlen-paired, 4278 hash-paired, 398 singletons, 11658 discordant, 341597 orphans, 9394 too large [>5000 bp], 13896918 duplicates)
Reads: 83390077 total, 46964 skipped (flags/unmapped)
Fragments: 41848620 total (41467317 tlen-paired, 4328 hash-paired, 501 singletons, 8036 discordant, 368438 orphans, 7406 too large [>5000 bp], 14612125 duplicates)
Reads: 91021556 total, 50905 skipped (flags/unmapped)
Fragments: 45675484 total (45235415 tlen-paired, 4855 hash-paired, 319 singletons, 12183 discordant, 422712 orphans, 21357 too large [>5000 bp], 16335226 duplicates)
Reads: 92791219 total, 87459 skipped (flags/unmapped)
Fragments: 46727021 total (45556294 tlen-paired, 3823 hash-paired, 391 singletons, 231634 discordant, 934879 orphans, 92494 too large [>5000 bp], 16678014 duplicates)