Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BK2S-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BK2S-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_BK2S-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BK2S-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79877462 total, 55506 skipped (flags/unmapped)
Fragments: 40095314 total (39690987 tlen-paired, 2522 hash-paired, 408 singletons, 14613 discordant, 386784 orphans, 9260 too large [>5000 bp], 16018256 duplicates)
Reads: 85942352 total, 52251 skipped (flags/unmapped)
Fragments: 43143491 total (42690058 tlen-paired, 3750 hash-paired, 347 singletons, 13396 discordant, 435940 orphans, 19703 too large [>5000 bp], 17259952 duplicates)
Reads: 87656730 total, 48875 skipped (flags/unmapped)
Fragments: 44005245 total (43567576 tlen-paired, 1973 hash-paired, 465 singletons, 10623 discordant, 424608 orphans, 11219 too large [>5000 bp], 17080302 duplicates)
Reads: 96071291 total, 97193 skipped (flags/unmapped)
Fragments: 48393801 total (47118185 tlen-paired, 2751 hash-paired, 443 singletons, 257109 discordant, 1015313 orphans, 101126 too large [>5000 bp], 19297172 duplicates)