Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_DX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_DX-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86294493 total, 45056 skipped (flags/unmapped)
Fragments: 43260237 total (42944831 tlen-paired, 3157 hash-paired, 339 singletons, 13366 discordant, 298544 orphans, 13923 too large [>5000 bp], 15831924 duplicates)
Reads: 73518015 total, 53910 skipped (flags/unmapped)
Fragments: 36848536 total (36579511 tlen-paired, 3764 hash-paired, 380 singletons, 13268 discordant, 251613 orphans, 9513 too large [>5000 bp], 13420590 duplicates)
Reads: 78634985 total, 42440 skipped (flags/unmapped)
Fragments: 39418370 total (39145179 tlen-paired, 2546 hash-paired, 350 singletons, 9178 discordant, 261117 orphans, 8636 too large [>5000 bp], 14086211 duplicates)
Reads: 87190656 total, 77260 skipped (flags/unmapped)
Fragments: 43802045 total (43047614 tlen-paired, 2952 hash-paired, 363 singletons, 144159 discordant, 606957 orphans, 58313 too large [>5000 bp], 16048994 duplicates)