Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_R-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85215499 total, 57718 skipped (flags/unmapped)
Fragments: 42709399 total (42411372 tlen-paired, 3267 hash-paired, 472 singletons, 15255 discordant, 279033 orphans, 9244 too large [>5000 bp], 15800072 duplicates)
Reads: 91168053 total, 50337 skipped (flags/unmapped)
Fragments: 45694179 total (45392891 tlen-paired, 3288 hash-paired, 538 singletons, 10282 discordant, 287180 orphans, 8538 too large [>5000 bp], 16609464 duplicates)
Reads: 100734752 total, 101500 skipped (flags/unmapped)
Fragments: 50580442 total (49767604 tlen-paired, 4920 hash-paired, 453 singletons, 152196 discordant, 655269 orphans, 64045 too large [>5000 bp], 18810855 duplicates)
Reads: 99732238 total, 54635 skipped (flags/unmapped)
Fragments: 49987056 total (49628301 tlen-paired, 4792 hash-paired, 428 singletons, 16540 discordant, 336995 orphans, 20457 too large [>5000 bp], 18563007 duplicates)