Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BWG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BWG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BWG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BWG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78730979 total, 47741 skipped (flags/unmapped)
Fragments: 39469906 total (39182025 tlen-paired, 2764 hash-paired, 392 singletons, 11623 discordant, 273102 orphans, 8460 too large [>5000 bp], 14147569 duplicates)
Reads: 85017536 total, 42276 skipped (flags/unmapped)
Fragments: 42624500 total (42324526 tlen-paired, 2810 hash-paired, 397 singletons, 7984 discordant, 288783 orphans, 7720 too large [>5000 bp], 14977671 duplicates)
Reads: 93476113 total, 82390 skipped (flags/unmapped)
Fragments: 46981306 total (46101769 tlen-paired, 4342 hash-paired, 355 singletons, 170338 discordant, 704502 orphans, 67984 too large [>5000 bp], 16917396 duplicates)
Reads: 92110395 total, 44087 skipped (flags/unmapped)
Fragments: 46182185 total (45835239 tlen-paired, 3107 hash-paired, 307 singletons, 11925 discordant, 331607 orphans, 16926 too large [>5000 bp], 16619194 duplicates)