Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_DG1-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DG1-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DG1-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DG1-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91503472 total, 59179 skipped (flags/unmapped)
Fragments: 45888883 total (45520073 tlen-paired, 3357 hash-paired, 399 singletons, 14816 discordant, 350238 orphans, 8582 too large [>5000 bp], 16391326 duplicates)
Reads: 109307282 total, 100486 skipped (flags/unmapped)
Fragments: 54961085 total (53849166 tlen-paired, 3116 hash-paired, 471 singletons, 217475 discordant, 890857 orphans, 87977 too large [>5000 bp], 19735744 duplicates)
Reads: 98208392 total, 48913 skipped (flags/unmapped)
Fragments: 49254344 total (48874088 tlen-paired, 2453 hash-paired, 589 singletons, 10464 discordant, 366750 orphans, 9065 too large [>5000 bp], 17321509 duplicates)
Reads: 107172390 total, 53293 skipped (flags/unmapped)
Fragments: 53748053 total (53319371 tlen-paired, 3065 hash-paired, 409 singletons, 15302 discordant, 409906 orphans, 16653 too large [>5000 bp], 19325324 duplicates)