Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_G72-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_G72-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_G72-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_G72-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90263703 total, 65219 skipped (flags/unmapped)
Fragments: 45250349 total (44905572 tlen-paired, 4241 hash-paired, 516 singletons, 16536 discordant, 323484 orphans, 10893 too large [>5000 bp], 16462747 duplicates)
Reads: 97258485 total, 56365 skipped (flags/unmapped)
Fragments: 48755960 total (48404957 tlen-paired, 3403 hash-paired, 636 singletons, 11386 discordant, 335578 orphans, 13207 too large [>5000 bp], 17350553 duplicates)
Reads: 105815030 total, 58454 skipped (flags/unmapped)
Fragments: 53052477 total (52652449 tlen-paired, 5337 hash-paired, 504 singletons, 17237 discordant, 376950 orphans, 14538 too large [>5000 bp], 19388929 duplicates)
Reads: 107677286 total, 106076 skipped (flags/unmapped)
Fragments: 54102589 total (53127797 tlen-paired, 3385 hash-paired, 547 singletons, 188271 discordant, 782589 orphans, 74584 too large [>5000 bp], 19718691 duplicates)