Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_EB-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EB-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EB-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_EB-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75866156 total, 54855 skipped (flags/unmapped)
Fragments: 38031004 total (37748115 tlen-paired, 2827 hash-paired, 365 singletons, 14199 discordant, 265498 orphans, 7578 too large [>5000 bp], 13492750 duplicates)
Reads: 81166319 total, 47356 skipped (flags/unmapped)
Fragments: 40688513 total (40400153 tlen-paired, 2975 hash-paired, 446 singletons, 9394 discordant, 275545 orphans, 8964 too large [>5000 bp], 14155369 duplicates)
Reads: 88557376 total, 53740 skipped (flags/unmapped)
Fragments: 44392624 total (44053292 tlen-paired, 3058 hash-paired, 315 singletons, 14514 discordant, 321445 orphans, 20074 too large [>5000 bp], 15789839 duplicates)
Reads: 89754802 total, 93293 skipped (flags/unmapped)
Fragments: 45088684 total (44293373 tlen-paired, 4011 hash-paired, 396 singletons, 151093 discordant, 639811 orphans, 62174 too large [>5000 bp], 16039355 duplicates)