Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_M6J-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_M6J-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_M6J-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_M6J-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74270453 total, 52561 skipped (flags/unmapped)
Fragments: 37347036 total (36845939 tlen-paired, 2794 hash-paired, 355 singletons, 9287 discordant, 488661 orphans, 6418 too large [>5000 bp], 14210453 duplicates)
Reads: 79714286 total, 47774 skipped (flags/unmapped)
Fragments: 40096792 total (39542542 tlen-paired, 2756 hash-paired, 568 singletons, 6950 discordant, 543976 orphans, 8736 too large [>5000 bp], 14940469 duplicates)
Reads: 87144889 total, 48783 skipped (flags/unmapped)
Fragments: 43828963 total (43214678 tlen-paired, 4009 hash-paired, 313 singletons, 9952 discordant, 600011 orphans, 19252 too large [>5000 bp], 16727808 duplicates)
Reads: 89893987 total, 101865 skipped (flags/unmapped)
Fragments: 45485257 total (43630688 tlen-paired, 4701 hash-paired, 461 singletons, 377446 discordant, 1471961 orphans, 147015 too large [>5000 bp], 17127827 duplicates)