Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_FA-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_FA-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1267_FA-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_FA-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 39535439 total, 40673 skipped (flags/unmapped)
Fragments: 20118718 total (19356551 tlen-paired, 2095 hash-paired, 233 singletons, 4716 discordant, 755123 orphans, 6343 too large [>5000 bp], 8847589 duplicates)
Reads: 41597970 total, 38716 skipped (flags/unmapped)
Fragments: 21199090 total (20342402 tlen-paired, 2002 hash-paired, 287 singletons, 2994 discordant, 851405 orphans, 6383 too large [>5000 bp], 9133091 duplicates)
Reads: 46354698 total, 37848 skipped (flags/unmapped)
Fragments: 23605870 total (22687720 tlen-paired, 1703 hash-paired, 157 singletons, 4743 discordant, 911547 orphans, 8407 too large [>5000 bp], 10492851 duplicates)
Reads: 49720908 total, 78646 skipped (flags/unmapped)
Fragments: 25797471 total (22715504 tlen-paired, 1459 hash-paired, 343 singletons, 631200 discordant, 2448965 orphans, 248314 too large [>5000 bp], 10926402 duplicates)