Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1267_CI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1267_CI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1267_CI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1267_CI-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63448866 total, 44052 skipped (flags/unmapped)
Fragments: 31807532 total (31565314 tlen-paired, 2757 hash-paired, 270 singletons, 12749 discordant, 226442 orphans, 8231 too large [>5000 bp], 10678310 duplicates)
Reads: 68393128 total, 35729 skipped (flags/unmapped)
Fragments: 34287040 total (34044443 tlen-paired, 2303 hash-paired, 295 singletons, 9257 discordant, 230742 orphans, 7178 too large [>5000 bp], 11239638 duplicates)
Reads: 74054008 total, 40243 skipped (flags/unmapped)
Fragments: 37127310 total (36838451 tlen-paired, 3834 hash-paired, 273 singletons, 13342 discordant, 271410 orphans, 15414 too large [>5000 bp], 12493157 duplicates)
Reads: 74933156 total, 71921 skipped (flags/unmapped)
Fragments: 37640601 total (36996785 tlen-paired, 2894 hash-paired, 295 singletons, 121075 discordant, 519552 orphans, 49940 too large [>5000 bp], 12705759 duplicates)