Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_dNh-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dNh-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dNh-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_dNh-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91919082 total, 49232 skipped (flags/unmapped)
Fragments: 46052021 total (45791144 tlen-paired, 3312 hash-paired, 515 singletons, 7557 discordant, 249493 orphans, 7908 too large [>5000 bp], 15540435 duplicates)
Reads: 85880184 total, 55948 skipped (flags/unmapped)
Fragments: 43023608 total (42769228 tlen-paired, 3255 hash-paired, 456 singletons, 11331 discordant, 239338 orphans, 8407 too large [>5000 bp], 14825996 duplicates)
Reads: 101617946 total, 94795 skipped (flags/unmapped)
Fragments: 51000096 total (50260137 tlen-paired, 2722 hash-paired, 495 singletons, 142304 discordant, 594438 orphans, 58946 too large [>5000 bp], 17699030 duplicates)
Reads: 100765689 total, 52993 skipped (flags/unmapped)
Fragments: 50483615 total (50181810 tlen-paired, 4870 hash-paired, 406 singletons, 11717 discordant, 284812 orphans, 15342 too large [>5000 bp], 17488577 duplicates)