Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_33Y-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_33Y-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_33Y-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_33Y-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 39805629 total, 45002 skipped (flags/unmapped)
Fragments: 20287602 total (19456053 tlen-paired, 2847 hash-paired, 234 singletons, 3601 discordant, 824867 orphans, 5262 too large [>5000 bp], 9471861 duplicates)
Reads: 42157534 total, 40723 skipped (flags/unmapped)
Fragments: 21522137 total (20578975 tlen-paired, 1884 hash-paired, 328 singletons, 2765 discordant, 938185 orphans, 5525 too large [>5000 bp], 9814191 duplicates)
Reads: 42937185 total, 39898 skipped (flags/unmapped)
Fragments: 21901712 total (20967973 tlen-paired, 3530 hash-paired, 189 singletons, 3238 discordant, 926782 orphans, 10417 too large [>5000 bp], 10392778 duplicates)
Reads: 50669519 total, 93273 skipped (flags/unmapped)
Fragments: 26329879 total (22998464 tlen-paired, 2891 hash-paired, 346 singletons, 699716 discordant, 2628462 orphans, 272648 too large [>5000 bp], 11739884 duplicates)