Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_FG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_FG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_FG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_FG3-N1-BDNA-1_A23TNVNLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75634181 total, 55774 skipped (flags/unmapped)
Fragments: 37973379 total (37566989 tlen-paired, 3650 hash-paired, 406 singletons, 12297 discordant, 390037 orphans, 11046 too large [>5000 bp], 13378588 duplicates)
Reads: 81402878 total, 42735 skipped (flags/unmapped)
Fragments: 40883190 total (40451324 tlen-paired, 1994 hash-paired, 391 singletons, 8161 discordant, 421320 orphans, 7737 too large [>5000 bp], 14158866 duplicates)
Reads: 89689126 total, 47061 skipped (flags/unmapped)
Fragments: 45043841 total (44559928 tlen-paired, 3497 hash-paired, 316 singletons, 12055 discordant, 468045 orphans, 11372 too large [>5000 bp], 16050342 duplicates)
Reads: 91438152 total, 85037 skipped (flags/unmapped)
Fragments: 46115899 total (44742886 tlen-paired, 2414 hash-paired, 381 singletons, 273858 discordant, 1096360 orphans, 109029 too large [>5000 bp], 16342302 duplicates)